Epidemiologic and antibiotic resistance profile and detection of meca gene in Staphylococcus spp. isolates from dog-owning veterinary students / Perfil epidemiológico e de resistência a antibióticos e detecção do gene meca em Staphylococcus spp. isolados de estudantes veterinários proprietários de cães / Perfil de resistencia epidemiológica y antibiótica y detección de género meca en Staphylococcus spp. estudiantes veterinarios aislados de perros

The maintenance of pets as reservoirs of multiresistant bacteria and the transmission of microorganisms such as Staphylococcus spp. between animals and humans can affect the effectiveness of antimicrobials in human medicine. The aim of this study was to detect risk factors, evaluate the phenotypic profile of antimicrobial resistance and detect the mecA gene in Staphylococcus spp. isolated from the nasal cavity of students of veterinary medicine who own dogs. This is a field survey where 35 nasal swab samples were collected to isolate Staphylococcus spp. The antimicrobial resistance of the isolates and the classification according to the multidrug resistance profile (MDR) were determined. The presence of the mecA gene was investigated in isolates with resistance to oxacillin. In addition, the research subjects answered a questionnaire about behavior towards the dog and hygiene habits to identify risk variables for developing antimicrobial resistance. The antimicrobials tested were ampicillin, penicillin, oxacillin, cephalothin, clindamycin, gentamicin, erythromycin, enrofloxacin, and tetracycline. 92.9% of coagulase-positive staphylococci (CoPS) and 45% of coagulase-negative staphylococci (CoNS) were resistant to the beta-lactam class, and 28.6% of CoPS and 45% of CoNS showed MDR profile. Three isolates were classified as resistant to oxacillin, and the mecA gene was detected in 100% of these isolates. About half of the individuals used antimicrobials in the last 12 months (52.9%), and 75% used amoxicillin, which could explain the high antimicrobial resistance profile. Dog owners harbor Staphylococcus spp. with high resistance to beta-lactam antimicrobials and a multi-resistance profile, representing a unique One Health problem.

A manutenção de pets como reservatórios de bactérias multirresistentes e a transmissão de microrganismos como Staphylococcus spp. entre animais e humanos podem afetar a eficácia de antimicrobianos na medicina humana. O objetivo deste estudo foi detectar fatores de risco, avaliar o perfil fenotípico de resistência antimicrobiana e detectar o gene mecA em Staphylococcus spp. isolados da cavidade nasal de estudantes de medicina veterinária proprietários de cães. Trata-se de pesquisa de campo onde 35 amostras de swab nasal foram coletadas para isolar Staphylococcus spp. A resistência antimicrobiana e a classificação segundo o perfil de multirresistência (MDR) dos isolados foram determinadas. A presença do gene mecA foi investigada em isolados resistentes à oxacilina. Os estudantes responderam a um questionário sobre comportamento em relação ao cão e hábitos de higiene para identificar variáveis de risco para o desenvolvimento de resistência antimicrobiana. Foram testados os antimicrobianos ampicilina, penicilina, oxacilina, cefalotina, clindamicina, gentamicina, eritromicina, enrofloxacina e tetraciclina. 92,9% dos estafilococos coagulase-positivos (CoPS) e 45% dos estafilococos coagulase-negativos (CoNS) foram resistentes à classe dos beta- lactâmicos e 28,6% CoPS e 45% CoNS apresentaram perfil MDR. Três isolados foram classificados como resistentes à oxacilina e o gene mecA foi detectado em 100% destes isolados. Mais da metade dos indivíduos fez uso de antimicrobiano nos últimos 12 meses (52,9%), 75% fizeram uso de amoxicilina, o que poderia explicar o alto perfil de resistência antimicrobiana. Os donos de cães abrigam Staphylococcus spp. com alta resistência aos antimicrobianos beta-lactâmicos e apresentam MDR, o que representa um problema de saúde única.

El mantenimiento de las mascotas como reservorios de bacterias multiresistentes y la transmisión de microorganismos como Staphylococcus spp. entre animales y seres humanos pueden afectar a la eficacia de los antimicrobianos en la medicina humana. El objetivo de este estudio fue detectar factores de riesgo, evaluar el perfil fenotípico de la resistencia antimicrobiana y detectar el gen meccaA en Staphylococcus spp. aislado de la cavidad nasal de estudiantes veterinarios dueños de perros. Se trata de una investigación de campo en la que se recogieron 35 muestras de hisopo nasal para aislar Staphylococcus spp. Se determinó la resistencia antimicrobiana y la clasificación de los aislados por perfil de multiresistencia (MDR). La presencia del gen de la mecaA se ha investigado en aislados resistentes a oxacilina. Los estudiantes respondieron a un cuestionario sobre comportamiento de perros y hábitos de higiene para identificar variables de riesgo para el desarrollo de resistencia antimicrobiana. Se han estudiado antimicrobianos como ampicilina, penicilina, oxacilina, cefalotina, clindamicina, gentamicina, eritromicina, enrofloxacina y tetraciclina. El 92,9% de los estafilococos coagulasa-positivos (CoPS) y el 45% de los estafilococos coagulasa- negativos (CoNS) fueron resistentes a la clase beta-lactam y el 28,6% de los CoPS y el 45% de los CoNS tenían un perfil de MDR. Se clasificaron tres aislados como resistentes a la oxacilina y se detectó el gen de la mecaA en el 100% de estos aislamientos. Más de la mitad de los individuos utilizaron antimicrobianos en los últimos 12 meses (52,9%), el 75% utilizó amoxicilina, lo que podría explicar el alto perfil de resistencia antimicrobiana. Los dueños de perros albergan Staphylococcus spp. con alta resistencia a los antimicrobianos beta-lactámicos y tienen MDR, lo que representa un único problema de salud.

Antibióticos innovadores contra la farmacorresistencia bacteriana obtenido por tecnología de edición genética CRISPR/Cas9 / Innovative antibiotics against bacterial drug resistance obtained by CRISPR/cas9 gene editing technology

Introducción: El aumento de la resistencia a los antimicrobianos constituye actualmente una peligrosa amenaza para la salud. Ante este problema global de falta de antimicrobianos, es perentorio intervenir de forma coordinada e idear fórmulas para incentivar la investigación a nivel internacional. Objetivo: Realizar una revisión actualizada sobre las causas y mecanismos de la resistencia a los antibióticos y la adaptación del sistema CRISPR/Cas para el desarrollo de innovadores antimicrobianos como parte esencial de una estrategia altamente específica en el tratamiento de infecciones producidas por bacterias resistentes. Métodos: Se realizó una revisión documental, se empleó la bibliografía nacional e internacional especializada publicada en los últimos 5 años. Se utilizó el motor de búsqueda Google Académico y se consultaron artículos de libre acceso en las bases de datos Pubmed, SciELO, LILACS, CUMED y HINARI, en el período comprendido entre marzo de 2020 hasta el mes de enero de 2021. Se revisaron un total de 41 artículos. Las consultas se hicieron en inglés y español. Para la búsqueda se tuvo en cuenta las palabras clave: eligobióticos; resistencia a antibióticos; CRISPR/Cas. Resultados: La evidencia recopilada sustenta que muchas enfermedades son inducidas por alteraciones del equilibrio de la microbiota humana y la técnica de edición genética CRISPR/Cas permitirá el desarrollo de novedosos antibióticos como los eligobióticos que eliminarán las bacterias patógenas multirresistentes y dejarán intacto el microbioma. Conclusiones: el esclarecimiento de los enigmas de la microbiota y su diseño con terapia génica permitirán el progreso de innovadores antibióticos con empleo del sistema CRISPR/Cas que ineludiblemente modificarán la práctica médica para siempre(AU)

Introduction: The increase in antimicrobial resistance is currently a dangerous threat to health. Faced with this global problem of lack of antimicrobials, it is imperative to intervene in a coordinated manner and devise formulas to encourage research at the international level. Objective: To review on the update causes and mechanisms of antibiotic resistance and the adaptation of CRISPR/Cas system for the development of innovative antimicrobials as an essential part of a highly specific strategy in the treatment of infections caused by resistant bacteria. Methods: A documentary review was carried out in the specialized national and international bibliography published in the last 5 years. Google Scholar search engine was used and free access articles were consulted in Pubmed, SciELO, LILACS, CUMED and HINARI databases, from March 2020 to January 2021. A total of 41 articles were retrieved. The consultations were made in English and Spanish. For the search, we took into account the keywords eligobiotics, antibiotic resistance, CRISPR/Cas. Results: The reviewed evidence supports that many diseases are induced by alterations in the balance of the human microbiota; and CRISPR/Cas gene editing technique will allow the development of novel antibiotics such as eligobiotics that will eliminate multi-resistant pathogenic bacteria and leave the microbiome intact. Conclusions: The clarification of the enigmas of the microbiota and its design with gene therapy will allow the progress of innovative antibiotics using CRISPR/Cas system that will inevitably change medical practice forever(AU)

Genotypic evaluation of antimicrobial resistance in Staphylococcus spp. isolated from bovine clinical mastitis / [Avaliação genotípica da resistência antimicrobiana em Staphylococcus spp. isolados de mastite clínica bovina]

Bovine clinical mastitis caused by Staphylococcus spp. is a serious and widespread disease in the world of dairy farming. Antimicrobial therapy is of fundamental importance in the prevention and treatment of infectious mastitis, but the indiscriminate use of antimicrobials acts as a determining factor for the spread of the disease. The present study evaluated the resistance profiles of 57 Staphylococcus spp. isolated from bovine clinical mastitis to beta-lactams and gentamicin, relating characteristics of phenotype (in vitro susceptibility tests) and genotype (detection and expression of genes encoding resistance - mecA, mecALGA251, blaZ, femA, femB, and aacA-aphD - using PCR and RT-PCR, respectively). One or more genes coding for resistance to different antimicrobials were detected in 50 Staphylococcus spp. isolates. The femA and femB genes were the most frequent (75.4% for both). The observed expression of the genes was as follows: blaZ (60%), femA (39.5%), aacA-aphD (50%), femB (32.6%), mecA (8.3%), and mecALGA251 (0%). Considering the relevance of the genus Staphylococcus to bovine mastitis, this study aimed to elucidate aspects regarding the genotypic and phenotypic profiles of these microorganisms so as to contribute to the development of effective strategies for mastitis control.(AU)

A mastite clínica bovina causada por Staphylococcus spp. é uma doença grave e generalizada no mundo da pecuária leiteira. A terapia antimicrobiana é de fundamental importância na prevenção e no tratamento da mastite infecciosa, mas o uso indiscriminado de antimicrobianos atua como fator determinante para a disseminação da doença. O presente estudo avaliou os perfis de resistência de 57 Staphylococcus spp. isolados de mastite clínica bovina em relação ao uso de betalactâmicos e gentamicina, relacionando características do fenótipo (testes de suscetibilidade in vitro) e genótipo (detecção e expressão de genes que codificam resistência - mecA, mecALGA251, blaZ, femA, femB, e aacA-aphD - usando PCR e RT-PCR, respectivamente). Um ou mais genes que codificam resistência a diferentes antimicrobianos foram detectados em 50 Staphylococcus spp. isolados. Os genes femA e femB foram os mais frequentes (75,4% para ambos). A expressão observada dos genes foi a seguinte: blaZ (60%), femA (39,5%), aacA-aphD (50%), femB (32,6%), mecA (8,3%) e mecALGA251 (0%). Considerando-se a relevância do gênero Staphylococcus para a mastite bovina, este estudo teve como objetivo elucidar aspectos referentes aos perfis genotípico e fenotípico desses microrganismos, a fim de contribuir para o desenvolvimento de estratégias eficazes para o controle da mastite.(AU)

Detection of the mecA gene in Staphylococcus spp. isolated from the nasal cavity of pigs - Preliminary data / [Detecção do gene mecA em Staphylococcus spp. isolados da cavidade nasal de suínos - dados preliminares]

O objetivo deste estudo foi realizar a caracterização genética de Staphylococcus spp. resistentes a meticilina isolados de suínos. Foram coletadas 30 amostras de swab nasal de suínos, abatidos em um frigorífico com Serviço de Inspeção Federal. Os isolados foram submetidos a análises macro e microscópicas que, em seguida, para detectar a resistência bacteriana, foram submetidos a ensaios fenotípicos da sensibilidade aos antimicrobianos. Posteriormente, as amostras resistentes a oxacilina, foram submetidas à reação em cadeia pela polimerase (PCR) para verificar a presença do gene mecA. Das 30 amostras analisadas, foram isolados 12 (40%) Staphylococcus spp. coagulase positiva, e 18 (60%) coagulase negativa, e, dentre os isolados, 26 (86,66%) foram resistentes a oxacilina sendo possível detectar o gene mecA em seis (23%) amostras. Este estudo evidencia a presença de genes de resistência em microrganismos comuns a microbiota de animais de produção que podem ser transmitidos ao homem. Além de chamar a atenção para a frequência e quantidade de antimicrobianos aos quais estes animais são expostos durante toda sua vida, podendo ser considerado um problema para a saúde única.(AU)

Resistencia antibiótica: el papel del hombre, los animales y el medio ambiente / Antibiotic resistance: the role of man, animals and the environment

RESUMEN Los microorganismos, especialmente las bacterias, están distribuidos por todo el mundo, desde el suelo, los mares y los ríos hasta el sistema digestivo de los animales y los seres humanos; por lo tanto, las bacterias mantienen una interacción constante con los compuestos utilizados por los seres humanos y los animales como los antibióticos, y con otros microorganismos que pueden ser de la misma especie o de diferentes géneros taxonómicos; esta interacción podría dar lugar a una presión selectiva sobre las bacterias en el medio ambiente y promover el intercambio de material genético, lo que llevaría a una propagación global de la resistencia a los antibióticos y a una afectación mundial de la salud. En este contexto, esta revisión tiene por objeto ofrecer una visión general del papel de los seres humanos, los animales y el medio ambiente en la resistencia bacteriana, con énfasis en los procesos en el suelo y los medios acuáticos y los efectos sobre la salud humana.

ABSTRACT Microorganisms, especially bacteria, are distributed throughout the world, from the soil, seas and rivers to the digestive system of animals and humans. Therefore, the bacteria maintain a constant interaction with compounds used by humans and animals, such as antibiotics, and with other microorganisms that may be of the same species or of different taxonomic genera. In addition, this interaction could lead to selective pressure on bacteria in the environment and promote the exchange of genetic material, which would allow to a global spread of antibiotic resistance and thus a worldwide affectation on health. In this context, the present review aims to provide an overview of the role of humans, animals and the environment in bacterial resistance, with emphasis on soil and aquatic processes and effects on human health.

Characteristics of virulence, resistance and genetic diversity of strains of Salmonella Infantis isolated from broiler chicken in Brazil / Características de virulência, resistência e diversidade genética de estirpes de Salmonella Infantis isoladas de frangos de corte no Brasil

Salmonella Infantis is frequently associated with human infections worldwide and is transmitted by consumption of contaminated foods, particularly those of animal origin, especially the chicken meat. We aimed to evaluate virulence characteristics, antimicrobial resistance and the genetic similarity of 51 strains of S. Infantis isolated from samples of poultry origin. The strains were isolated from 2009 to 2010 in a company with full cycle of broiler's production in the state of São Paulo, Brazil. The antimicrobial susceptibility test was performed and, by PCR, we evaluated the presence of the genes lpfA (hem-adhesion), agfA (hem-biofilm) and sefA (hem-adhesion) and resistance genes to beta-lactams (blaTEM, blaSHV, bla CTX-M and blaAmpC ). The phylogenetic relationship was determined by RAPD-PCR method. Among the drugs tested, the highest percentages of resistance were to amoxicillin (35.3%) and to sulfonamide (15.7%). Eleven antimicrobial resistance patterns were identified (A1 to A11), none of them presented a multiresistance profile (> 3 antimicrobials classes). There was 100% of positivity for the agfA gene, 92.2% for the lpfA gene, and no strain presented the sefA gene. Most of the isolates showed similarities in virulence potential, since they were simultaneously positive for two studied genes, agfA and lpfA (92.2%, 47/51). Of the 18 (35.3%) strains resistant to antimicrobials of the β-lactam class, 10 (55.5%) were positive to blaAmpC gene, five (27.8%) for blaCTX-M , two (11.1%) to blaSHV and no strain presented the blaTEM gene. The phylogenetic evaluation has shown the presence of five clusters (A, B, C, D and E) with similarity greatSalmonella Infantis is frequently associated with human infections worldwide and is transmitted by consumption of contaminated foods, particularly those of animal origin, especially the chicken meat. We aimed to evaluate virulence characteristics, antimicrobial resistance and the genetic similarity of 51 strains of S. Infantis isolated from samples of poultry origin. The strains were isolated from 2009 to 2010 in a company with full cycle of broiler's production in the state of São Paulo, Brazil. The antimicrobial susceptibility test was performed and, by PCR, we evaluated the presence of the genes lpfA (hem-adhesion), agfA (hem-biofilm) and sefA (hem-adhesion) and resistance genes to beta-lactams (blaTEM, blaSHV, bla CTX-M and blaAmpC ). The phylogenetic relationship was determined by RAPD-PCR method. Among the drugs tested, the highest percentages of resistance were to amoxicillin (35.3%) and to sulfonamide (15.7%). Eleven antimicrobial resistance patterns were identified (A1 to A11), none of them presented a multiresistance profile (> 3 antimicrobials classes). There was 100% of positivity for the agfA gene, 92.2% for the lpfA gene, and no strain presented the sefA gene. Most of the isolates showed similarities in virulence potential, since they were simultaneously positive for two studied genes, agfA and lpfA (92.2%, 47/51). Of the 18 (35.3%) strains resistant to antimicrobials of the ß-lactam class, 10 (55.5%) were positive to blaAmpC gene, five (27.8%) for blaCTX-M , two (11.1%) to blaSHV and no strain presented the blaTEM gene. The phylogenetic evaluation has shown the presence of five clusters (A, B, C, D and E) with similarity greater than 80%, and three distinct strains which were not grouped in any cluster. Cluster B grouped 33 strains, all positive for lpfA and agfA genes, from both, the broiler farming facility and the slaughterhouse, persistent throughout all the study period. This cluster also grouped 18 strains clones with genetic similarity greater than 99%, all isolated in the slaughterhouse. The presence of virulence genes associated with persistent strains clones for a long period, warns to the possibility of S. Infantis to form biofilm, and should be constantly monitored in broilers' production chain, in order to know the profile of the strains that may contaminate the final product and evaluate the hazards that represents to public health.er than 80%, and three distinct strains which were not grouped in any cluster. Cluster B grouped 33 strains, all positive for lpfA and agfA genes, from both, the broiler farming facility and the slaughterhouse, persistent throughout all the study period. This cluster also grouped 18 strains clones with genetic similarity greater than 99%, all isolated in the slaughterhouse. The presence of virulence genes associated with persistent strains clones for a long period, warns to the possibility of S. Infantis to form biofilm, and should be constantly monitored in broilers' production chain, in order to know the profile of the strains that may contaminate the final product and evaluate the hazards that represents to public health.(AU)

Salmonella Infantis é frequentemente associada a infecções humanas no mundo todo sendo transmitida pelo consumo de alimentos contaminados, principalmente aqueles de origem animal, com destaque para a carne de frango. Objetivou-se avaliar características de virulência, resistência antimicrobiana e a similaridade genética de 51 estirpes de S. Infantis isoladas em amostras de origem avícola. As estirpes foram isoladas no período de 2009 a 2010 em uma empresa com ciclo completo de produção de frango de corte, localizada no estado de São Paulo, Brasil. Foi realizado o teste de susceptibilidade antimicrobiana e pela técnica de PCR, foi avaliada a presença dos genes lpfA (fímbria-adesão), agfA (fímbria-biofilme) e sefA (fímbria-adesão) e os genes de resistência aos beta-lactâmicos (bla TEM, blaSHV, blaCTX-M e blaAmpC ). A relação filogenética foi determinada pelo método de RAPD-PCR. Dentre as drogas testadas, os maiores percentuais de resistência foram para amoxacilina com 35,3% e sulfonamida com 15,7%. Onze perfis de resistência aos antimicrobianos foram identificados (A1 a A11), sendo que nenhum deles apresentou perfil de multirresistência (>3 classes de antimicrobianos). Houve 100% de positividade para o gene agfA, 92,2% para o gene lpfA e nenhuma estirpe apresentou o gene sefA. A maioria dos isolados apresentaram semelhanças no potencial de virulência, pois foram positivos simultaneamente para dois genes estudados, agfA e lpfA (92,2% - 47/51). Das 18 (35,3%) estirpes resistentes aos antimicrobianos da classe dos ß-lactâmicos, 10 (55,5%) foram positivas para o gene blaAmpC , cinco (27,8%) para blaCTX-M , duas (11,1%) para blaSHV e nenhuma estirpe apresentou o gene bla TEM . A avaliação filogenética demonstrou a presença de cinco clusters (A, B, C, D e E) com similaridade superior a 80%, e três estirpes distintas que não foram agrupadas em nenhum dos clusters. O cluster B agrupou 33 estirpes, todas positivas para os genes lpfA e agfA, provenientes tanto do aviário quanto do matadouro frigorífico, persistentes durante todo o período do estudo. Este cluster ainda agrupou 18 estirpes clones com similaridade genética superior a 99%, todas isoladas no matadouro frigorífico. A presença dos genes de virulência, associada à persistência das estirpes clones durante um longo período do estudo, alertam para a possibilidade de S. Infantis em formar biofilme, devendo ser constantemente monitorada na cadeia de produção avícola, especialmente no ambiente de abate, de forma a conhecer o perfil das estirpes que podem contaminar o produto final e assim avaliar os perigos que representam para a saúde pública.(AU)

Antibiotic resistance of Enterococcus faecalis from persistent endodontic infections / Resistencia antibiótica de Enterococcus faecalis provenientes de infecciones endodónticas persistentes

Enterococci are important nosocomial pathogens due to their intrinsic multiresistance and the acquisition of new antibiotic resistance genes (ARG). Enterococcus faecalis has been shown to be one of the main pathogens in persistent endodontic infections, therefore, the main objective of this study was to evaluate the phenotype and resistance genotype of strains of E. faecalis isolated from teeth with persistent endodontic lesions, to the most commonly prescribed antibiotics in dentistry. Thirteen strains of E. faecalis of different pulsotype were analyzed to evaluate the susceptibility to antibiotics, amoxicillin, amoxicillin/clavulanic acid, tetracycline, erythromycin and metronidazole, using the Epsilometer test (E- test) and the presence of beta-lactamases with nitrocefin test. Finally, the detection of ARG was performed with a molecular polymerase chain reaction (PCR) technique and confirmed by the sequencing of the amplification products. Fisher's exact test was used, using 95 % confidence. Regarding the phenotype of resistance, the evaluated strains, independent of the pulsotype, were totally resistant to the action of metronidazole. Antibiotics with higher minimum inhibitory concentration (MIC) after metronidazole include tetracycline and erythromycin. In contrast, lower MIC are applied to the combination of amoxicillin with clavulanic acid. The nitrocefin test was positive only in one strain. Genotypically, two genetically distant strains isolated from a single patient, presented a genotype of resistance to erythromycin, determined by the presence of the ermB gene. No statistically significant relationship was found between phenotypic resistance and the presence of ARG in relation to erythromycin (p> 0.05). It was concluded that isolates of E. faecalis from persistent endodontic infections showed phenotypes of resistance to several antimicrobial agents, all of which were susceptible to amoxicillin/clavulanic acid. Periodic evaluation of susceptibility to antibiotics is suggested as an important practice for the surveillance of antibiotic resistance in oral strains.

Los enterococos son importantes patógenos nosocomiales debido a su multi resistencia intrínseca y la adquisición de nuevos genes de resistencia a los antibióticos (ARG). Enterococcus faecalis es uno de los principales patógenos en infecciones endodónticas persistentes, por lo tanto, el objetivo principal de este estudio fue evaluar el fenotipo y el genotipo de resistencia de cepas de E. faecalis aisladas de dientes con lesiones endodóncicas persistentes, a los antibióticos comúnmente recetados en odontología. Se analizaron 13 cepas de E. faecalis de diferentes pulsotipos para evaluar la susceptibilidad a los antibióticos, amoxicilina, amoxicilina / ácido clavulánico, tetraciclina, eritromicina y metronidazol, utilizando la prueba de Epsilometría (E-test) y la presencia de beta-lactamasas con prueba de nitrocefina. Finalmente, la detección de ARG se realizó con una técnica molecular de reacción en cadena de la polimerasa (PCR) y se confirmó mediante la secuenciación de los productos de amplificación. Se utilizó la prueba exacta de Fisher, con un 95 % de confianza. En cuanto al fenotipo de resistencia, las cepas evaluadas, independientes del pulsotipo, fueron totalmente resistentes a la acción del metronidazol. Los antibióticos con los valores más altos de concentración mínima inibitoria (CMI) después del metronidazol incluyen tetraciclina y eritromicina. En contraste, las CMI mas bajas se aplican a la combinación de amoxicilina con ácido clavulánico. La prueba de nitrocefina fue positiva solo en una cepa. Genotípicamente, dos cepas distantes genéticamente, aisladas de un mismo paciente fueron positivas para el gen ermB. No se encontró una relación estadísticamente significativa entre la resistencia fenotípica y la presencia de ARG en relación con la eritromicina (p> 0,05). Se concluyó que los aislamientos de E. faecalis de infecciones endodónticas persistentes mostraron fenotipos de resistencia a varios agentes antimicrobianos, todos los cuales fueron susceptibles a amoxicilina / ácido clavulánico. Se sugiere una evaluación periódica de la susceptibilidad a los antibióticos como una práctica importante para la vigilancia de la resistencia a los antibióticos en las cepas orales.

Updating of in vitro antifungal susceptibility tests. / Actualización de los métodos de estudio de sensibilidad in vitro a los antifúngicos.

Fungal diseases, including those caused by (multi)drug-resistant fungi, still represent a global public health concern. Information on the susceptibility of these microorganisms to antifungal agents must be quickly produced to help clinicians initiate appropriate antifungal therapies. Unfortunately, antifungal susceptibility tests are not as developed or widely implemented as antibacterial tests, being similar in design, accuracy and reproducibility, but also laborious and slow. In this article, we review the methods of in vitro susceptibility testing, both reference (CLSI and EUCAST), commercial and new methods based on proteomics (MALDI-TOF MS) and in the detection of resistance genes by nucleic acid amplification techniques. In addi-tion, we discuss the newly established clinical breakpoints, as well as the epidemiological cut-off points, which constitute a new category that can help in the early identification of isolates that have acquired resistance mechanisms. We also discuss the advantages and limitations of each of the methods studied. Therefore, we can conclude that, although there has been much progress in studies of in vitro susceptibility testing to antifungals, there are still limitations in its application in the daily routine of microbiology labo-ratories, although it seems that the future is promising with the new technologies based on proteomics and nucleic acid amplification. Supplement information: This article is part of a supplement entitled «SEIMC External Quality Control Programme. Year 2016¼, which is sponsored by Roche, Vircell Microbiologists, Abbott Molecular and Francisco Soria Melguizo, S.A. © 2019 Elsevier España, S.L.U. and Sociedad Española de Enfermedades Infecciosasy Microbiología Clínica. All rights reserved.

Resistencia microbiana desde una perspectiva metagenómica / Microbial resistance from one metagenomic perspective

Resumen Objetivo. La finalidad de esta revisión es abarcar la temática relacionada con los genes de resistencia a antibióticos, sus orígenes, reservorios y movimientos en los diferentes hábitats mediante la metagenómica funcional que permite aislar, identificar y analizar estos genes, así como el impacto que tienen en salud pública. Durante los últimos años se ha visto un gran avance en la microbiología, una de las grandes limitaciones a las que se venían enfrentado los microbiólogos era no poder acceder a la totalidad de los microorganismos que habitan el planeta. Gracias al desarrollo de diferentes disciplinas como la metagenómica se ha logrado tener el acceso a estos microorganismos. Metodología. La importancia de la metagenómica en la resistencia microbiana radica en que, actualmente, solo el 1 % de los microorganismos que habitan el suelo pueden ser estudiados por técnicas convencionales de microbiología, quedando alrededor del 99 % de estos sin estudiar. Al mitigar este gran inconveniente, la metagenómica permite el estudio de la microbiota del suelo en su totalidad generando nuevo conocimiento e información relevante en diferentes campos científicos. Resultados. Mediante la metagenómica funcional se ha podido determinar que el suelo puede ser un posible reservorio de determinantes de resistencia microbiana, debido a que la microbiota que allí habita contiene en su material genético genes de resistencia a antibióticos que confieren resistencia a un amplio espectro de antibióticos utilizados en terapia humana de forma indiscriminada y además tienen todos los mecanismos de resistencia conocidos, algunos de estos genes son generados por presión selectiva ante diferentes agentes presentes en su medio y otros son genes constitutivos que cumplen con funciones significativas en su hábitat. El gran impacto que tienen estos hallazgos está dado en que pueden representar un posible riesgo en salud pública si se adquieren por los patógenos humanos.

Abstract Objective. The purpose of this review is to cover the issues related to antibiotic resistance genes, their origins, reservoirs and movements in different habitats through functional metagenomics that allows to isolate, identify and analyze these genes, as well as the impact they have on health public. During the last years a great advance in the microbiology has been seen, one of the great limitations to which the microbiologists had been facing was not being able to have access to the totality of the microorganisms that inhabit the planet. Thanks to the development of different disciplines such as metagenomics, access to these microorganisms has been achieved. Method. The importance of metagenomics in microbial resistance lies in the fact that currently only 1 % of the microorganisms that inhabit the soil can be studied by conventional microbiology techniques, leaving about 99 % of these without studying, the metagenomics by mitigating this great disadvantage allows the study of the soil microbiota in its entirety generating new knowledge and relevant information in different scientific fields. Results. Through functional metagenomics it has been possible to determine that the soil can be a possible reservoir of determinants of microbial resistance, because the microbiota that live there contain in their genetic material antibiotic resistance genes that confer resistance to a broad spectrum of antibiotics used in human therapy indiscriminately and also have all known mechanisms of resistance, some of these genes are generated by selective pressure against different agents present in their environment and others are constitutive genes that fulfill significant functions in their habitat. The great impact of these findings is that they can represent a possible public health risk if they were acquired by human pathogens.

Resistencia antimicrobiana de Streptococcus agalactiae de origen humano y bovino / Antimicrobial resistance of Streptococcus agalactiae of human and bovine origin / Resistência antimicrobiana de Streptococcus agalactiae de origem humana e bovina

Resumen Streptococcus agalactiae (SAG) es un agente etiológico importante en un amplio espectro de infecciones humanas y bovinas. En humanos, este patógeno es el principal responsable de septicemias severas y muertes neonatales, debido a la enfermedad conocida como "sepsis neonatal", la cual ha sido reportada en diferentes países, incluyendo a Colombia. Cerca del 36% de las mujeres embarazadas son colonizadas por esta bacteria y de ellas el 45% de los neonatos adquiere la infección por SAG. En adultos, la colonización de SAG asintomática ocurre frecuentemente en el tracto gastrointestinal y genitourinario. Sin embargo, puede llegar a causar enfermedades tales como meningitis, septicemia, abscesos, infecciones del tracto urinario y artritis especialmente en adultos inmunocomprometidos. Adicionalmente, SAG es considerado un patógeno de alta importancia en la producción lechera, por ser responsable de cuadros generalmente subclínicos y crónicos de mastitis en vacas, afectando la sanidad del hato, así como la calidad y cantidad de leche producida. La principal herramienta para el control de SAG es el uso de antimicrobianos tipo betalactámicos o tipo macrólidos en casos de pacientes alérgicos a las penicilinas. Sin embargo, se ha reportado aislamientos de SAG resistentes o con susceptibilidad disminuida a los antimicrobianos utilizados para su control en ambas especies: humanos y bovinos. El hallazgo de resistencia antimicrobiana en SAG está recibiendo atención entre la comunidad científica en todo el mundo debido a su impacto negativo en la salud pública. El presente trabajo es una revisión de literatura científica, no sistemática, que tiene como objetivo analizar los mecanismos y la prevalencia de la resistencia antimicrobiana de SAG, así como los genes asociados a esta condición en aislamientos de origen humano y bovino.

Abstract Streptococcus agalactiae (SAG) is an important etiologic agent in a wide spectrum of human and bovine infections. In humans, this pathogen is the main responsible of severe septicemia and neonatal dead, due to the disease known as "neonatal sepsis", which has been reported in different countries, including Colombia. About 36% of pregnant women are colonized by this bacterium and of them, the 45% of the newborns acquire the SAG infection. In adults, asymptomatic SAG colonization occurs frequently in gastrointestinal and genitourinary tract. However, it can cause diseases such as meningitis, septicemia, abscesses, infections in urinary tract and arthritis particularly in immunocompromised adults. Additionally, SAG is considered a highly important pathogen in dairy production for being responsible of mastitis cases generally subclinical and chronic in cows, affecting the herd health, as well as the quality and the quantity of milk produced. The main tool for SAG control is the use of beta-lactams antimicrobials or macrolides in cases of penicillin-allergic patients. Some of the studies reported resistant SAG isolates or with decreased susceptibility to the antimicrobials used for its control in both species: humans and bovines. The finding of antimicrobial resistance in SAG is getting attention from the scientific community around the world because its negative impact in public health. The present work is a non-systematic review of scientific literature, with the objective of analyzing the mechanism and prevalence of SAG antimicrobial resistance, as well as, the genes associated to this condition in human and bovine isolates.

Resumo Streptococcus agalactiae (SAG) é um agente etiológico importante em um amplo espectro de infecções humanas e bovinas. Nos seres humanos, esse patógeno é a principal causa de septicemia grave e mortes neonatais, devido à doença conhecida como "sepse neonatal", que tem sido relatada em diferentes países, incluindo a Colômbia. Cerca de 36% das mulheres grávidas são colonizadas por esta bactéria e destes 45% dos recém-nascidos adquirem a infecção pelo SAG. Em adultos, a colonização do SAG assintomático ocorre com freqüência nos tratos gastrintestinal e genitourinário. No entanto, pode levar a doenças como meningite, septicemia, abscessos, infecções do trato urinário e artrite, especialmente em adultos imunocomprometidos. Além disso, a SAG é considerado um patógeno de grande importância na produção de leite, sendo responsável mastite geralmente subclínica e crônica em caixas de vacas, afetando a saúde do rebanho, ea qualidade e quantidade de leite produzida. A principal ferramenta para o controle do SAG é o uso de antimicrobianos beta-lactâmicos ou do tipo macrolídeo em casos de pacientes alérgicos a penicilinas. No entanto, isolados de SAG resistentes ou com reduzida susceptibilidade aos antimicrobianos usados para controlá-los foram relatados em ambas as espécies: humanos e bovinos. O achado de resistência antimicrobiana no SAG está recebendo atenção entre a comunidade científica em todo o mundo devido ao seu impacto negativo na saúde pública. Este papel é uma revisão da literatura científica, não sistemática, ou seja para analisar os mecanismos e a prevalência de resistência antimicrobiana SAG, bem como os genes associados com esta condição em isolados humanos e bovinos.

Population structure of Chinese southwest wheat germplasms resistant to stripe rust and powdery mildew using the DArT-seq technique / População de germoplasmas resistentes de trigo empregando a técnica de sequenciamento Dart-seq

ABSTRACT: Understanding genetic variability in existing wheat accessions is critical for collection, conservation and use of wheat germplasms. In this study, 138 Chinese southwest wheat accessions were investigated by genotyping using two resistance gene makers (Pm21 and Yr26) and DArT-seq technique. Finally, about 50% cultivars (lines) amplified the specific allele for the Yr26 gene (Gwm11) and 40.6% for the Pm21 gene (SCAR1265). By DArT-seq analysis, 30,485 markers (6486 SNPs and 23999 DArTs) were obtained with mean polymorphic information content (PIC) value 0.33 and 0.28 for DArT and SNP marker, respectively. The mean Dice genetic similarity coefficient (GS) was 0.72. Two consistent groups of wheat varieties were identified using principal coordinate analysis (PCoA) at the level of both the chromosome 6AS and the whole-genome, respectively. Group I was composed of non-6VS/6AL translocation lines of different origins, while Group II was composed of 6VS/6AL translocation (T6VS/6AL) lines, most of which carried the Yr26 and Pm21 genes and originated from Guizhou. Besides, a model-based population structure analysis revealed extensive admixture and further divided these wheat accessions into six subgroups (SG1, SG2, SG3, SG4, SG5 and SG6), based on their origin, pedigree or disease resistance. This information is useful for wheat breeding in southwestern China and association mapping for disease resistance using these wheat germplasms in future.

RESUMO: O conhecimento da estrutura da população é essencial para o mapeamento de associação de resistência a doenças para a população de trigo. Neste estudo, a técnica de DART-seq™ foi usada para genotipar o genoma inteiro de cultivares de trigo. Finalmente, 30,485 marcadores (6486 SNPs e 23999 dardos) foram obtidos, e dois grupos de variedades de trigo foram identificados por meio de análise principal-coordenadas (PCoA) do nível de todo o genoma e o nível 6AS cromossomo. O grupo I foi composto por linhas não T6VS/6Al de diferentes origens, enquanto o Grupo II foi composto de linhas T6VS/6Al, sendo que da maioria destes realizados os genes Yr26 e PM21 originários de Guizhou.

Genotyping and antimicrobial resistance in Escherichia coli from pig carcasses / Genotipagem e resistência antimicrobiana de Escherichia coli em carcaças suínas

The increasing antimicrobial resistance observed worldwide in bacteria isolated from human and animals is a matter of extreme concern and has led to the monitoring of antimicrobial resistance in pathogenic and commensal bacteria. The aim of this study was to evaluate the antimicrobial resistance profile of Escherichia coli isolated from pig carcasses and to assess the occurrence of relevant resistance genes. A total of 319 E. coli isolates were tested for antimicrobial susceptibility against different antimicrobial agents. Moreover, the presence of extended-spectrum β-lactamase (ESBL) and inducible ampC-β-lactamase producers was investigated. Eighteen multi-resistant strains were chosen for resistance gene detection and PFGE characterization. The study showed that resistance to antimicrobials is widespread in E. coli isolated from pig carcasses, since 86.2% of the strains were resistant to at least one antimicrobial and 71.5% displayed multi-resistance profiles. No ampC-producing isolates were detected and only one ESBL-producing E. coli was identified. Genes strA (n=15), floR (n=14), aac(3)IVa (n=13), tetB (n=13), sul2 (n=12), tetA (n=11), aph(3)Ia (n=8) and sul3 (n=5) were detected by PCR. PFGE analysis of these multi-resistant E. coli strains showed less than 80% similarity among them. We conclude that antimicrobial multi-resistant E. coli strains are common on pig carcasses and present highly diverse genotypes and resistance phenotypes and genotypes.(AU)

O incremento de resistência frente aos antimicrobianos, observado em bactérias isoladas de humanos e animais, tem sido motivo de preocupação mundial e levado ao monitoramento dos perfis de resistência em bactérias patogênicas e comensais. O objetivo desse estudo foi avaliar o perfil de resistência em Escherichia coli isolada de carcaças suínas e descrever a ocorrência de alguns genes de resistência relevantes. Um total de 319 isolados de E. coli foi testado quanto à suscetibilidade frente a diversos antimicrobianos. A presença de isolados produtores de β-lactamases (ESBL) de espectro estendido e β-lactamase induzível do tipo ampC foi também investigada. Dezoito cepas multirresistentes foram escolhidas para investigação de genes de resistência e caracterização por macro-restrição (PFGE). Os resultados demonstraram que a resistência a antimicrobianos está disseminada, pois 86,2% dos isolados de E. coli foram resistentes ao menos a um antimicrobiano e 71,5% apresentaram perfil de multirresistência. Uma cepa de E. coli produtora de ESBL e nenhuma produtora de ampC induzível foram identificadas. Os genes strA (n=15); floR (n=14);aac(3)-IVa (n=13); tetB (n=13); sul2 (n=12); tetA (n=11); aph(3')Ia (n=8); sul3 (n=5) foram detectados por PCR. A análise de PFGE demonstrou que cepas de E. coli multirresistentes apresentaram similaridade inferior a 80% entre si. Concluiu-se que cepas multirresistentes de E. coli são frequentes em carcaças de suínos e apresentam uma alta diversidade genotípica, bem como de fenótipos e genes de resistência.(AU)

Resistance to B-lactam and tetracycline in Campylobacter spp isolated from broiler slaughterhouses in southern Brazil / Resistência a B-lactâmicos e tetraciclina em Campylobacter spp isolados de matadouros-frigoríficos de aves no sul do Brasil

The study was carried out to screen and analyze the genetic characteristics of antimicrobial resistance in Campylobacter spp. from poultry sources. A total of 141 strains of Campylobacter isolated from samples of broilers of slaughterhouses in southern Brazil was identified by phenotypic and genotypic methods. Campylobacter isolates were evaluated for its antimicrobial susceptibility and the presence of resistance genes. The strains were investigated for antimicrobial susceptibility against two agents (ampicillin and tetracycline) by disk diffusion method. PCR assay was used to confirm the specie and the presence of ampicillin (blaOXA-61), tetracycline tet(O), and the energy-dependent multi-drug efflux pump (cmeB) genes. Campylobacter jejuni was the most ubiquitous; its presence was determined in 140 samples out of 141 (99.3%), whereas Campylobacter coli was found only in one of the contaminated samples (0.70%). The results obtained showed 65% and 35.5% of Campylobacter isolates resistant to β-lactams and tetracyclines, respectively. The cmeB gene responsible for multidrug resistance was detected in 26 isolates out 141 strains (18.5%). Moreover, 36 out of 141 Campylobacter strains (25.6%) were found to be resistant to at least two different antimicrobia resistance markers (β-lactams and tetracyclines)...

O presente estudo foi realizado para examinar e analisar as características genéticas de resistência antimicrobiana de Campylobacter spp. a partir de fontes avícolas. Um total de 141 amostras de Campylobacter isolados em matadouros-frigoríficos de aves do estado do Rio Grande do Sul, Brasil, foi identificado por métodos fenotípicos e genotípicos. Foi analisada a susceptibilidade antimicrobiana e a presença de genes de resistência. As cepas foram testadas para detectar sensibilidade frente a dois antimicrobianos (ampicilina e tetraciclina) pelo método de difusão em disco. A seguir, usando a reação em cadeia da polimerase foi confirmada a espécie e a presença dos genes de resistência à ampicilina (blaOXA-61) e tetraciclina tet(O), assim como a detecção da bomba de efluxo (cmeB). Campylobacter jejuni foi a espécie mais isolada, sua presença foi determinada em 140 amostras (99,3%), e Campylobacter coli foi encontrada em uma única amostra (0,70%). Os resultados obtidos mostraram 65% e 35,5% de Campylobacter isolados resistentes a β-lactâmicos e tetraciclinas, respectivamente. O gene cmeB responsável pela resistência a múltiplos antimicrobianos foi detectado em 26 amostras (18,5%). Neste contexto, 36 das 141 amostras (25,6%) foram consideradas resistentes a dois grupos diferentes de antimicrobianos (β-lactâmicos e tetraciclinas)...

Antimicrobial resistance, virulence factors and genetic lineages of hospital-onset methicillin-resistant Staphylococcus aureus isolates detected in a hospital in Zaragoza.

INTRODUCTION: MRSA population dynamics is undergoing significant changes, and for this reason it is important to know which clones are circulating in our nosocomial environment. MATERIALS AND METHODS: A total of 118 MRSA isolates were collected from clinical samples from patients with previous hospital or healthcare contact (named as hospital-onset MRSA (HO-MRSA)) during a one year period. Susceptibility testing was performed by disk diffusion and microdilution. The presence of resistance genes and virulence factors were tested by PCR. All isolates were typed by SCCmec, spa and agr typing. PFGE and MLST were applied to a selection of them. RESULTS: Eighty-three HO-MRSA isolates (70.3%) were resistant to any antibiotic included in the macrolide-lincosamide-streptogramin B group. Among these isolates, the M phenotype was the most frequent (73.5%). One hundred and seven of HO-MRSA isolates (90.7%) showed aminoglycoside resistance. The combination aac(6')-Ie-aph(2″)-Ia+ant(4')-Ia genes was the most frequent (22.4%). Tetracycline resistance rates in HO-MRSA isolates were low (3.4%), although a high level of mupirocin resistance was observed (25.4%). Most of the HO-MRSA isolates (approximately 90%) showed SCCmec type IVc and agr type II. Fifteen unrelated pulsotypes were identified. CC5 was the most prevalent (88.1%), followed by CC8 (5.9%), CC22 (2.5%), CC398 (2.5%) and CC1 (0.8%). CONCLUSION: CC5/ST125/t067 lineage was the most frequent. This lineage was related to aminoglycoside resistance, and to a lesser extent, with macrolide resistance. The presence of international clones as EMRSA-15 (CC22/ST22), European clones as CC5/ST228, community clones related to CC1 or CC8 and livestock associated clones, as CC398, were observed in a low percentage.

[Antibiotic resistance: A global crisis]. / Resistencia bacteriana a los antibióticos: una crisis global.

The introduction of antibiotics into clinical practice represented one of the most important interventions for the control of infectious diseases. Antibiotics have saved millions of lives and have also brought a revolution in medicine. However, an increasing threat has deteriorated the effectiveness of these drugs, that of bacterial resistance to antibiotics, which is defined here as the ability of bacteria to survive in antibiotic concentrations that inhibit/kill others of the same species. In this review some recent and important examples of resistance in pathogens of concern for mankind are mentioned. It is explained, according to present knowledge, the process that led to the current situation in a short time, evolutionarily speaking. It begins with the resistance genes, continues with clones and genetic elements involved in the maintenance and dissemination, and ends with other factors that contribute to its spread. Possible responses to the problem are also reviewed, with special reference to the development of new antibiotics.

Pesquisa de genes de resistência a quinolonas em bacilos Gram negativos de origem clínica e ambiental / Research for genes of quinolone resistance in Gram negative bacilli from clinical and environmental origin

Introdução. Quinolonas são antimicrobianos sintéticos que inibem as enzimas DNA-girase e topoisomerase IV resultando na morte bacteriana. São altamente eficazes no tratamento de infecções bacterianas, especialmente causadas por bactérias Gram negativas, e portanto amplamente utilizados na medicina humana e veterinária, na qual também são empregados como profiláticos. Porém, o uso indiscriminado e inadequado levou ao aumento de bactérias resistentes a estes compostos. Esta resistência pode ocorrer devido a mutações nas enzimas DNA-girase e topoisomerase IV, e também por genes contidos em plasmídeos. Estes últimos são os principais responsáveis pela disseminação e circulação da resistência entre o meio ambiente e o ambiente hospitalar. Objetivos. Pesquisar genes de resistência a antimicrobianos do grupo das quinolonas em bactérias Gram negativas de origem clínica e ambiental que apresentam resistência fenotípica a este grupo. Material e Métodos. 73 cepas de Enterobacteriaceae e Aeromonas sp. de origem clínica e ambiental foram selecionadas para o estudo, e avaliadas quanto à sensibilidade aos antimicrobianos do grupo das quinolonas e à pesquisa de genes de resistência a este mesmo grupo e mutações no gene que codifica a enzima DNA-girase por meio de PCR e sequenciamento. Resultados. Das 73 cepas previamente selecionadas para compor o estudo, 65 foram utilizadas, devido à exclusão de perfis clonais similares. Nestas, foram observados os genes, qnrS1 (1,5 por cento ), qnrS2 (26,2 por cento ), qnrB1 (3,1 por cento ), qnrB19 (12,3 por cento ), qnrD1 (1,5 por cento ), aac(6)-Ib-cr (10,8 por cento ), oqxA (43,1 por cento ) e oqxB (41,5 por cento ), e duas variantes determinadas qnrB-like (3,1 por cento ) e qnrB69-like (1,5 por cento ). Os genes qnrA, qnrC e qepA não foram identificados. Mutações na enzima DNA-girase foram observadas em 97,9 por cento das cepas positivas para algum dos genes pesquisados...

Introduction. Quinolones are synthetic antimicrobial agents that inhibit DNA gyrase and topoisomerase IV enzymes resulting in bacterial death. They are highly effective in the treatment of bacterial infections, especially the ones caused by Gram negative bacteria, as well as for prophylaxy. Therefore they are widely used in human and veterinary medicine. However, indiscriminate and improper use led to an increase of bacteria resistance to these compounds. This resistance can be due to mutations in DNA gyrase and topoisomerase IV enzymes and also by genes contained in plasmids, which are mainly responsible for the spread and transmission of resistance between the environment and the hospital set. Objectives. To search for genes of resistance to quinolone antimicrobial agents in Gram-negative bacteria from clinical and environmental strains that present phenotypic resistance to this group. Material and Methods. 73 strains of Enterobacteriaceae and Aeromonas spp., from clinical and environmental origin, were selected for this study, and evaluated for antimicrobial susceptibility of quinolone and search of resistance genes in this same group and also for mutations in the gene encoding the enzyme DNA gyrase by PCR and sequencing. Results. Of the 73 strains previously selected to compose this study, 65 were used, due to the exclusion of similar clonal profiles. In these, genes qnrS1 (1.5 per cent ), qnrS2 (26.2 per cent ) qnrB1 (3.1 per cent ), qnrB19 (12.3 per cent ) qnrD1 (1.5 per cent ) aac(6')-Ib-cr (10.8 per cent ) oqxA (43.1 per cent ) and oqxB (41.5 per cent ) were observed, and two variants were named as qnrB-like (3.1 per cent ) and qnrB69-like (1.5 per cent ). The qnrA, qnrC and qepA genes were not identified. Mutations in DNA gyrase enzyme were observed in 97.9 per cent of the positive strains for at least one of the genes studied. It was possible to establish the association of aac(6')-Ib-cr with class 1 integron gene in four strains...

[Linezolid resistant coagulase-negative Staphylococcus: phenotypical and genotypical characteristics and sensitivity to antibiotic combinations]. / Staphylococcus coagulasa negativos resistentes al linezolid: características fenotípicas, genotípicas y sensibilidad a combinaciones de antibióticos.

OBJECTIVE: We recovered 22 coagulase-negative staphylococci isolates in our hospital to study their identity, susceptibility, epidemiological profile, linezolid resistance mechanisms, and the possibilities of different antibiotic combinations. METHODS: Isolate identification was performed using mass spectrometry (Vitek-MS, bioMérieux). Susceptibility testing was carried out with the Vitek-2 system and the broth microdilution method according to CLSI guidelines. Pulsed-field gel electrophoresis (PFGE) was performed to analyze the genetic relationship between isolates. Linezolid resistance mechanisms were evaluated by PCR/sequencing: presence of cfr gene, point mutations in domain V of 23S ribosomal RNA and additional ribosomal mutations (in the rplC, rplD and rplV genes). The in vitro activity of linezolid was investigated alone and in combination with another three antibiotics acting on different cellular targets, using E-test strips. RESULTS: Twenty isolates were identified as Staphylococcus epidermidis, and 2 as Staphylococcus hominis. PFGE showed that isolates belonged to diverse clones, 21 of them presented mutations in the domain V region of 23S rRNA and the cfr gene was found in 54.5%. Prior administration of linezolid was documented in most of cases. Linezolid in combination with gentamicin showed a synergistic activity in 45.5% of isolates. CONCLUSIONS: Staphylococcus epidermidis was the most prevalent linezolid-resistant coagulase-negative staphylococci. All isolates showed increased MIC values compared to other anti-staphylococcal drugs and several linezolid resistance mechanisms. Our data suggest that linezolid plus gentamicin could be a synergistic combination against linezolid-resistant coagulase-negative staphylococci.

Caracterização fenotípica, produção de biofilme e resistência aos antimicrobianos em isolados de Staphylococcus spp. obtidos de casos de mastite em bovinos e bubalinos / Phemotypic characterization, biofilm production and antimicrobial resistance of Staphylococcus spp. isolates from cattle and buffaloes mastitis

No presente estudo, objetivou-se avaliar a sussuscetibilidade aos principais antimicrobianos e realizar uma caracterização fenotípica e genotípica de isolados de Staphylococcus spp. obtidos de casos de mastite em vacas (n=30) e búfalas (n=30). A suscetibilidade foi avaliada pela técnica de disco-difusão e a presença de bomba de efluxo foi avaliada utilizando-se Ágar Mueller Hinton (MH) adicionado de brometo de etídeo e pesquisa do gene msrA. Pela técnica da Reação em Cadeia da Polimerase (PCR) ainda foram identificados os genes mecA, blaZ e ermA, B e C, que posteriormente foram associados com os métodos fenotípicos para a identificação de resistência a antimicrobianos. A caracterização da formação de biofilme foi realizada utilizandose os métodos Ágar Vermelho Congo (CRA), Aderência em Placa e a identificação do gene icaD. Pelo método de discodifusão, os Staphylococcus spp. apresentaram alta sensibilidade aos antimicrobianos. O índice de resistência múltipla aos antimicrobianos (IRMA) apresentou variação de 0 a 0,5. Na pesquisa de bomba de efluxo, 26,7% das amostras foram positivas ao método fenotípico e 6,7% ao método genotípico (gene msrA). Os genes erm, mecA e blaZ foram detectados, respectivamente, em 1,7%, 6,7% e 11,7% das amostras de Staphylococcus spp. Na produção de biofilme, 23,3% dos isolados foram considerados positivos no CRA, 50,0% na Aderência em Placas e 8,3% na PCR pela detecção do gene icaD. Observou-se que os isolados obtidos de amostras bovinas apresentaram uma menor sensibilidade aos antimicrobianos no teste de disco-difusão quando comparados com as amostras bubalinas. A caracterização destes isolados é importante para orientar uma antibioticoterapia bem planejada. A presença de biofilme nos isolados pode estar associada a outros fatores que não a resistência às drogas antimicrobianas.

The aim of the present study was to evaluate the antimicrobial susceptibility pattern and to perform the phenotypic and genotypic characterization of the Staphylococcus spp. isolates from mastitis cases in cattle (n=30) and buffaloes (n=30). The susceptibility to antimicrobial drugs was performed by disk diffusion test and the presence of efflux pump was evaluated in Mueller Hinton (MH) Agar supplemented with ethidium bromide as well as by detection of msrA gene. Similarly, the PCR technique was done to detect mecA, blaZ and ermA, B e C genes, that were related after with the presence of antimicrobial resistance in disk diffusion test. The formation of biofilm was characterized using Congo Red Agar (CRA), microplate adherence and detection of icaD gene. Staphylococcus spp. isolates shown high antimicrobial susceptibility in disk diffusion test. The multidrug resistance (MDR) rate ranged from 0 and 0,5. In the efflux pump test, 26.7% of Staphylococcus spp. strains were positive in phenotypic method and 6.7% in PCR for msrA gene. The erm, mecA and blaZ genes were detected in 1.7%, 6.7% and 11.7% of Staphylococcus spp. strains respectively. In biofilm production tests, 23.3% of the samples were positive in CRA, 50% in microplate adherence test and 8.3% in icaD gene PCR. The cattle isolates were less sensitive to antimicrobial drugs when compared to the buffaloes ones. The characterization of these isolates is very important to guide a successful antimicrobial therapy. The biofilm presence in the isolates may be associated with other factors besides antimicrobial resistance.

Análise do perfil de resistência a antibióticos e detecção dos genes de virulência e resistência em Aeromonas provenientes de amostras ambientais / Analysis of antibiotic resistance profile and detection of virulence and resistance genes in Aeromonas from environmental samples

As Aeromonas são bactérias distribuídas predominantemente em meio aquático. São consideradas patógeno emergente, podendo causar doenças em peixes como também no homem. Os problemas mais comuns são a gastrenterite no homem e morte em peixes. OBJETIVO: Este estudo foi desenvolvido para comparar a identificação fenotípica com a genotípica, e também para conhecer o perfil de resistência aos antibióticos em Aeromonas caviae, A. aquariorum, e A. sanarellii isoladas do ambiente aquático e a presença de genes de virulência e resistência. MATERIAL E MÉTODOS: O DNA das 24 cepas em estudo foi extraído por choque térmico e purificado utilizando CTAB. Foram realizadas as PCRs para a detecção dos genes de virulência e dos genes de resistência, após a realização do antibiograma. RESULTADOS: Foram identificadas 4 A. caviae das quais 3(75,0 por cento) apresentaram pelo menos um dos genes act, ast ou alt. Das 3 A. aquariorum, 1(33,3 por cento) apresentaram positividade para os genes act e ast. Entre os 5 isolados de A. sanarellii 1(50,0 por cento) possuíam os genes alt e ast. Seis isolados não foram posicionados taxonomicamente entre as espécies descritas de Aeromonas, e dentre essas um exemplar apresentou o gene alt. Em relação às enzimas MBL e AmpC foram obtidos respectivamente: 3(100 por cento) e 3(100 por cento) em A. aquariorum; 2(50,0 por cento) e 4(100 por cento) em A. caviae; 3(75,0 por cento) e 5(100 por cento) em Aeromonas spp.; 1(20 por cento) e 5(100 por cento) A. sanarellii; Nenhum isolado apresentou resultado positivo, no teste fenotípico, para a produção de ESBL. Com a realização da PCR foi detectada a presença de 5 amostras com gene tipo blaMOX, 21blaCPHA , 17 tipo blaTEM e 2 cepH. CONCLUSÃO: Os resultados sugerem que os isolados podem servir potencialmente como reservatórios de resistência aos antimicrobianos e ainda, que os isolados podem ser considerados patógeno emergentes e significativos para a saúde pública.

Aeromonas spp. is predominantly distributed in the aquatic environment. They are regarded as emerging pathogen, causing disease in fish but also in man. The most common problems are gastroenteritis in humans and death in fish. OBJECTIVE: This study was designed to compare phenotypic with genotypic identification, and also to know the profile of antibiotic resistance in Aeromonas caviae, A. aquariorum, and A. sanarellii isolated from aquatic environment and the presence of virulence genes and resistance. MATERIAL AND METHODS: DNA from 24 strains under study was extracted by thermal shock and purified using CTAB. PCR reactions were performed for the detection of virulence and resistance genes, after the completion of the antibiotic resistance test. RESULTS: We identified four A. caviae from which 3(75.0per cent) had at least one of the genes act, ast or alt. From 3 A. aquariorum, 1(33.3per cent) was positive for the genes act and ast. Among the five isolated A. sanarellii, 1(50.0per cent) had the alt and ast genes Six isolates were not positioned within taxonomically described species of Aeromonas, and among these only one strain presented the alt gene. Regarding the MBL and AmpC it was obtained respectively: 3(100per cent) and 3(100per cent) isolates from A. aquariorum; 2(50.0per cent) and 4(100per cent) isolates from A. caviae; 4(66.7per cent) and 3(50.0per cent) isolates from Aeromonas spp.; and 1(20per cent) and 5 (100per cent) isolates from A. sanarellii. None of the isolates showed positive results in the phenotypic test for ESBL production. The PCR reaction detected the presence of 5 strains with blaMOX-like gene; 21 with blaCPHA gene; 17 with blaTEM-like gene and 2 with cepH gene. CONCLUSION: These findings suggest that the isolates may serve as potential reservoirs of antimicrobial resistance and also that the isolates could be considered emerging pathogens of public health significance.